star

Software Summary

Mesabi

Default Module:

2.7.1a

Other Modules Available:

2.7.1a, 2.7.11b, 2.5.3a

Last Updated On:

Tuesday, August 13, 2024

Mesabi K40

Default Module:

Other Modules Available:

Last Updated On:

Mangi

Default Module:

2.7.1a

Other Modules Available:

2.7.1a, 2.7.11b, 2.5.3a

Last Updated On:

Tuesday, August 13, 2024

Mangi v100

Default Module:

Other Modules Available:

Last Updated On:

NICE

Default Module:

Other Versions Available:

Last Updated On:

Tuesday, August 13, 2024

Support Level:

Primary Support

Software Access Level:

Open Access

Home Page:

Link

Software Categories:

Biostatistics

Genetics

Software Description

Spliced Transcripts Alignment to a Reference (STAR) is a software package developed for aligning large RNA-seq datasets.

Software Documentation

Software Documentation Tabs

General Linux

You can load this software for use in an interactive Linux environment via the command:

module load star

Slurm Example

#!/bin/bash
#SBATCH --job-name="rfm_RunSTARTest_job"
#SBATCH --ntasks=24
#SBATCH --ntasks-per-node=24
#SBATCH --output=rfm_RunSTARTest_job.out
#SBATCH --error=rfm_RunSTARTest_job.err
#SBATCH --time=0:10:0
#SBATCH -p small,large,ram256g,ram1t
module load star/2.5.3a
wget https://public.s3.msi.umn.edu/reframe/sw/star/Melampsora_laricipopulina....
wget https://public.s3.msi.umn.edu/reframe/sw/trimmomatic/seq.fq
STAR --runMode genomeGenerate --runThreadN 24 --genomeDir ./ --genomeFastaFiles Melampsora_laricipopulina.GCA_000204055.1.dna.toplevel.fa
STAR --genomeDir ./ --runThreadN 24 --readFilesIn seq.fq --outFileNamePrefix output