Minnesota Supercomputing Institute
2019.10, 2020.6, 2020.8, 2021.2, 2023.2, 2017.9, 2018.11, 2018.2, 2018.6, 2019.1
Monday, October 16, 2023
QIIME 2 is a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results. QIIME 2 is a complete redesign and rewrite of the QIIME 1 microbiome analysis pipeline.
To load this software for use in an interactive Linux environment, use the commands:
module load qiime2
#!/bin/bash #SBATCH --job-name="rfm_RunQIIME2Test_job" #SBATCH --ntasks=1 #SBATCH --ntasks-per-node=1 #SBATCH --output=rfm_RunQIIME2Test_job.out #SBATCH --error=rfm_RunQIIME2Test_job.err #SBATCH --time=0:10:0 #SBATCH -p small,large,ram256g,ram1t module load qiime2/2019.1 qiime info