Pilon

Software Summary

Mesabi

Default Module:

1.22

Other Modules Available:

1.20, 1.22

Last Updated On:

Friday, February 9, 2024

Mesabi K40

Default Module:

Other Modules Available:

Last Updated On:

Mangi

Default Module:

1.22

Other Modules Available:

1.20, 1.22

Last Updated On:

Friday, February 9, 2024

Mangi v100

Default Module:

Other Modules Available:

Last Updated On:

NICE

Default Module:

Other Versions Available:

Last Updated On:

Friday, February 9, 2024

Support Level:

Primary Support

Software Access Level:

Open Access

Home Page:

Link

Software Categories:

Genetics

Software Description

From the Pilon documentation:

"Pilon uses read alignment analysis to diagnose, report, and automatically improve de novo genome assemblies as well as call variants."

Software Documentation

Software Documentation Tabs

General Linux

To run this software interactively in a Linux environment use the commands:

module load pilon

pilon [options]

Because this software uses an alias for to create the pilon command, to use this software in a PBS script you will need to add the following line to your script before loading the pilon module:

shopt -s expand_aliases

Instructions for using Pilon can be found on the Pilon Wiki