Oases

Software Summary

Mesabi

Default Module: 

0.2.08_maxkmer95_longseq_openmp

Other Modules Available: 

0.2.08, 0.2.08_maxkmer95_longseq_openmp

Last Updated On: 

Tuesday, August 29, 2023

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
0.2.08_maxkmer95_longseq_openmp
Other Modules Available: 

0.2.08, 0.2.08_maxkmer95_longseq_openmp

Last Updated On: 

Tuesday, August 29, 2023

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Tuesday, August 29, 2023

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Home Page: 
Link
Software Categories: 
Genetics
Software Description

Oases is a de novo transcriptome assembler designed to produce transcripts from short read sequencing technologies, such as Illumina, SOLiD, or 454 in the absence of any genomic assembly. It was developed by Marcel Schulz (MPI for Molecular Genomics) and Daniel Zerbino (previously at the European Bioinformatics Institute (EMBL-EBI), now at UC Santa Cruz).

Software Documentation

Software Documentation Tabs