MapSplice

Software Summary

Mesabi

Default Module: 
Other Modules Available: 
Last Updated On: 

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 

1.14.1

Other Versions Available: 

1.14.1

Last Updated On: 

Wednesday, December 7, 2016

Last Updated On: 

Wednesday, December 7, 2016

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Home Page: 
Link
Software Categories: 
Genetics
Software Description

MapSplice is an algorithm for mapping RNA-seq data to reference genome for splice junction discovery.

Features of MapSplice include1. alignment of both short reads < 75bp and long reads >= 75bp.2. both CPU and memory efficiency.3. detection of small exons.4. discovery of canonical, semi-canonical and non-canonical junctions.5. splice inference based on the alignment quality and diversity of reads mapped to a junction.6. identification of chimeric events (intra-chromosomes and inter-chromosomes, inter-strands) with long reads.7. support paired-end reads and single-end reads

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