IGV

Software Summary

Mesabi

Default Module:

2.16.1

Other Modules Available:

2.10.2, 2.16.1, 2.3.47, 2.3.8, 2.3.9, 2.8.0

Last Updated On:

Tuesday, August 29, 2023

Mesabi K40

Default Module:

Other Modules Available:

Last Updated On:

Mangi

Default Module:

2.16.1

Other Modules Available:

2.10.2, 2.16.1, 2.3.47, 2.3.8, 2.3.9, 2.8.0

Last Updated On:

Tuesday, August 29, 2023

Mangi v100

Default Module:

Other Modules Available:

Last Updated On:

NICE

Default Module:

Other Versions Available:

Last Updated On:

Tuesday, August 29, 2023

Support Level:

Secondary Support

Software Access Level:

Open Access

Home Page:

Link

Software Categories:

Genetics

Software Description

The Integrative Genomics Viewer (IGV) is a high-performance visualization tool for interactive exploration of large, integrated genomic datasets. It supports a wide variety of data types, including array-based and next-generation sequence data, and genomic annotations.

Software Documentation

Software Documentation Tabs

General Linux

To run this software interactively in a Linux environment use the commands:

module load igv
igv.sh

You can also launch IGV, a Java application, on your own computer by visiting the IGV homepage (user registration is required.

IGV has a selection of genomes pre-loaded. If you are using your own computer you will need to move your bam file(s) to your own computer too. An alternative method is to login to a MSI computer with NX client and enter the following command in a terminal:

isub -q lab

Then, start a web browser, log in to Galaxy, and save your bam file(s) into a scratch folder if you just need them temporarily, or save them to your project space folder if you want to save them long term. Files left in scratch folder will be deleted automatically after two weeks.

Additional Information