HyPhy

Software Summary

Mesabi

Default Module: 

2.5.53

Other Modules Available: 

2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33

Last Updated On: 

Wednesday, September 13, 2023

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
2.5.53
Other Modules Available: 

2.5.53, 2.2, 2.2.6_mpi, 2.2.6_smp, 2.5.33

Last Updated On: 

Wednesday, September 13, 2023

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Wednesday, September 13, 2023

Support Level: 
Primary Support
Software Access Level: 
Open Access
Home Page: 
Link
Software Categories: 
Genetics
Software Description

HyPhy stands for hypothesis testing using phylogenies. It is an open-source software package for the analysis of genetic sequences using techniques in phylogenetics, molecular evolution, and machine learning. It also features a complete graphical user interface (GUI) and a rich scripting language for limitless customization of analyses. Additionally, HyPhy features support for parallel computing environments (via message passing interface) and it can be compiled as a shared library and called from other programming environments such as Python or R.