bedtools

Software Summary

Mesabi

Default Module: 

2.29.2

Other Modules Available: 

2.17.0, 2.25.0, 2.27.1, 2.29.2

Last Updated On: 

Tuesday, August 29, 2023

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
2.29.2
Other Modules Available: 

2.17.0, 2.25.0, 2.27.1, 2.29.2

Last Updated On: 

Tuesday, August 29, 2023

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Tuesday, August 29, 2023

Support Level: 
Primary Support
Software Access Level: 
Open Access
Home Page: 
Link
Software Categories: 
Genetics
Software Description

The BEDTools utilities allow one to address common genomics tasks such as finding feature overlaps and computing coverage. The utilities are largely based on four widely-used file formats: BED, GFF/GTF, VCF, and SAM/BAM. Using BEDTools, one can develop sophisticated pipelines that answer complicated research questions by "streaming" several BEDTools together.

Software Documentation

Software Documentation Tabs