trinity

Software Summary

Mesabi

Default Module: 

2.8.5

Other Modules Available: 

2.10.0, 2.14.0, 2.8.5, 2.1.1, 2.4.0, 2.5.1, 20140717

Last Updated On: 

Tuesday, August 29, 2023

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
2.8.5
Other Modules Available: 

2.10.0, 2.14.0, 2.8.5, 2.1.1, 2.4.0, 2.5.1, 20140717

Last Updated On: 

Tuesday, August 29, 2023

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Tuesday, August 29, 2023

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Home Page: 
Link
Software Categories: 
Genetics
Software Description

Trinity is a program for the efficient and robust de novo (no reference genome required) reconstruction of transcriptomes from RNA-seq data. Trinity produces a large number of intermediate files (500,000 to 1,000,000). The MSI filesystem limits each group to a maximum of 1 million files. Therefore it is recommended that you configure Trinity to write output to /scratch (using the option "--output /scratch/trinity"), where there is no file number limit, and copy the fasta assembly file back to your group folder when Trinity has finished.

Software Documentation

Software Documentation Tabs