riboPicker

Software Summary

Mesabi

Default Module: 

0.4.3

Other Modules Available: 

0.4.3

Last Updated On: 

Tuesday, August 29, 2023

Mesabi K40

Default Module: 
Other Modules Available: 
Last Updated On: 

Mangi

Default Module: 
0.4.3
Other Modules Available: 

0.4.3

Last Updated On: 

Tuesday, August 29, 2023

Mangi v100

Default Module: 
Other Modules Available: 
Last Updated On: 

NICE

Default Module: 
Other Versions Available: 
Last Updated On: 
Last Updated On: 

Tuesday, August 29, 2023

Support Level: 
Secondary Support
Software Access Level: 
Open Access
Home Page: 
Link
Software Categories: 
Genetics
Software Description

The riboPicker tool can be used to automatically identify and efficiently remove rRNA-like sequences from metatranscriptomic and metagenomic datasets.

At MSI, we provide a stand-alone version of the tool.  So the user must have some linux background to use this tool.

If you are not familiar with the command line, the developer also provides a web-version of the software at:

http://edwards.sdsu.edu/cgi-bin/ribopicker/ribopicker.cgi

Please note, for the web-version, your input file should be less than 2GB in size.

Software Documentation

Software Documentation Tabs