Funannotate

Software Summary

Mesabi

Default Module:

testing

Other Modules Available:

1.5.0, 1.5.1, 1.5.3, 1.6.0, 1.8.1, 1.8.5, testing, 0.5.4, 0.6.0, 1.1.1, 1.1.1.CentOS7, 1.3.1, 1.3.1.CentOS7

Last Updated On:

Thursday, August 31, 2023

Mesabi K40

Default Module:

Other Modules Available:

Last Updated On:

Mangi

Default Module:

testing

Other Modules Available:

1.5.0, 1.5.1, 1.5.3, 1.6.0, 1.8.1, 1.8.5, testing, 0.5.4, 0.6.0, 1.1.1, 1.1.1.CentOS7, 1.3.1, 1.3.1.CentOS7

Last Updated On:

Thursday, August 31, 2023

Mangi v100

Default Module:

Other Modules Available:

Last Updated On:

NICE

Default Module:

Other Versions Available:

Last Updated On:

Thursday, August 31, 2023

Support Level:

Secondary Support

Software Access Level:

Open Access

Home Page:

Link

Software Categories:

Genetics

Software Description

Funannotate is a pipeline for genome annotation originally designed for use with fungi genomes, but it can also be applied for other eukaryotes.

Software Documentation

Software Documentation Tabs

General Linux

In order to load Funannotate for interactive use on a Linux system, use the following command:

module load funannotate

It is highly recommended that you do not load in any other modules alongside Funannotate, as this can disrupt Funannotate's dependencies.

Please note that two of the dependencies of Funannotate are restricted-access software, for use by academic researchers only. In order to use Funannotate, contact help@msi.umn.edu and request access to SignalP4 and GeneMark-ET.